Z-stack Depth Colorcode ImageJ FIJI plugin
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Nov 6, 2025 - Java
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imagej-plugin
Here are 29 public repositories matching this topic...
ExTrack MLE for diffusive noisy single-particle tracks
python image-analysis microscopy diffusion spt maximum-likelihood-estimation single-particle-tracking imagej-plugin
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Sep 13, 2025 - Jupyter Notebook
This is a plugin for ImageJ2 for multifractal analysis of 2D and 3D images. Cite: MULTIFRAC: An ImageJ plugin for multiscale characterization of 2D and 3D stack images . IG Torre, R. J. Heck and AM Tarquis. SoftwareX, 12, 100574.
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Aug 28, 2020 - Java
spatial and temporal cross correlations in 1D and 2D for fluorescent microscopy (ImageJ plugin)
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Nov 6, 2025 - Java
An ImageJ plugin to analyze the flagellar beat of sperm, motile cilia beat, and sperm steering.
ciliary-motion sperm-tracking imagej-plugin flagella sperm-steering spermq-analysis flagellar-beat ciliary-beat
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Jan 28, 2024 - Java
Scripts for executing Fiji plugin BoneJ in headless mode in Python to compute bone microstructure metrics
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Nov 25, 2025 - Python
An ImageJ plugin to quantify ciliary shape, length, and fluorescence.
imagej-plugins fluorescence-microscopy-imaging time-lapse-imaging cilia cilium ciliaq-workflow imagej-plugin confocal-images primary-cilia cilium-length ciliary-fluorescence
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Oct 11, 2025 - Java
A toolbox to analyze spherical and filamentous objects in multifocal images with high precision.
java sperm fluid-dynamics particle-tracking particle-imaging-velocimetry high-speed-imaging sperm-tracking imagej-plugin spermq-mf multifocal-images flagella 3d-particle-tracking sperm-steering flagellar-beat 3d-particle-imaging-velocimetry
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Aug 9, 2021 - MATLAB
A simple toolbox of ImageJ plugins for quantifying adipocyte morphology and function in tissues and in vitro.
image-analysis adipose-tissue immunohistochemical-images fluorescence-microscopy-imaging cell-biology droplets-detection adipocyte-differentiation droplet-analysis imagej-plugin adipose-tissue-segmentation lipid-droplets adipocytes
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Aug 11, 2025
😎 Awesome lists about ImageJ Plugins!
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Nov 10, 2021
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Nov 28, 2025 - Java
Fiji/ImageJ plugin to annotate a labeled image
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Nov 17, 2023 - Java
This plugin creates a quiver plot (a.k.a. vector plot) from two images. One image contains the vector angles (degrees) and the second image contains the vector displacements (i.e. speed). This plugin is also recordable, and can be implemented in a macro
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Apr 12, 2017 - Java
ImageJ-plugin that performs standard analysis of colony formation assays conducted in 6- to 24-well dishes.
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Jun 28, 2024 - ImageJ Macro
Fiji/ImageJ plugin to help measuring linear distances.
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Feb 1, 2023 - Python
An ImageJ library for computing features for regions stored in a label map
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Jan 21, 2026 - Java
ImageJ plugin to quickly load multiphoton imaging data from PrairieView folders
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Sep 11, 2023 - Java
ExtractSharpestPlane_JNH is an ImageJ/FIJI plugin to automatically extract the sharpest plane by highest SD from image stacks for large data sets.
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Nov 4, 2021 - Java
Mageek is an ImageJ Java plugin to batch process microscope images
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Mar 16, 2022 - Java
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