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@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

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  1. distributions distributions Public

    Makefile 5 11

  2. q2cli q2cli Public

    Command line interface for QIIME 2

    Python 19 30

  3. docs docs Public archive

    Python 21 60

Repositories

Showing 10 of 81 repositories
  • q2-feature-classifier Public

    QIIME 2 plugin supporting taxonomic classification

    qiime2/q2-feature-classifier’s past year of commit activity
    Python 21 BSD-3-Clause 40 9 (2 issues need help) 2 Updated Mar 20, 2026
  • distributions Public
    qiime2/distributions’s past year of commit activity
    Makefile 5 BSD-3-Clause 11 6 6 Updated Mar 20, 2026
  • q2-diversity Public
    qiime2/q2-diversity’s past year of commit activity
    Python 3 BSD-3-Clause 44 46 3 Updated Mar 20, 2026
  • q2-phylogeny Public

    Phylogenetic reconstruction, and operations on phylogenetic trees.

    qiime2/q2-phylogeny’s past year of commit activity
    Python 5 BSD-3-Clause 20 2 1 Updated Mar 20, 2026
  • qiime2/q2-composition’s past year of commit activity
    Python 6 BSD-3-Clause 29 7 2 Updated Mar 20, 2026
  • library Public

    A website for sharing QIIME 2 Plugins

    qiime2/library’s past year of commit activity
    Svelte 0 BSD-3-Clause 2 3 1 Updated Mar 19, 2026
  • q2-alignment Public

    Support for multiple sequence alignment in QIIME 2.

    qiime2/q2-alignment’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 23 6 2 Updated Mar 18, 2026
  • qiime2/action-library-packaging’s past year of commit activity
    Python 0 BSD-3-Clause 5 0 1 Updated Mar 17, 2026
  • amplicon-docs Public

    Source for QIIME 2 amplicon documentation.

    qiime2/amplicon-docs’s past year of commit activity
    Makefile 1 2 6 0 Updated Mar 16, 2026
  • q2doc Public

    A MyST executable plugin for documenting QIIME 2 plugins.

    qiime2/q2doc’s past year of commit activity
    Python 0 2 7 1 Updated Mar 16, 2026