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@mskcc

Memorial Sloan Kettering

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  1. vcf2maf vcf2maf Public

    Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

    Perl 412 222

  2. facets facets Public

    Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

    R 158 71

  3. ngs-filters ngs-filters Public

    Filters for false-positive mutation calls in NGS

    R 34 21

  4. iCallSV iCallSV Public

    Forked from rhshah/iCallSV

    A Framework to call Structural Variants from NGS based datasets

    Python 3 1

  5. mutation-signatures mutation-signatures Public

    Create mutation signatures from MAF's, and decompose them into Stratton signatures

    R 60 30

Repositories

Showing 10 of 243 repositories
  • ccs_cohort_utils Public
    mskcc/ccs_cohort_utils’s past year of commit activity
    Python 0 1 0 0 Updated Mar 10, 2026
  • igo-lims-plugins Public

    Sapio LIMS customizations to workflows for IGO

    mskcc/igo-lims-plugins’s past year of commit activity
    Java 2 0 1 9 Updated Mar 10, 2026
  • beagle Public

    Voyager Backend

    mskcc/beagle’s past year of commit activity
    Python 2 Apache-2.0 6 98 (2 issues need help) 21 Updated Mar 10, 2026
  • smile-dashboard Public
    mskcc/smile-dashboard’s past year of commit activity
    TypeScript 0 AGPL-3.0 10 0 3 Updated Mar 9, 2026
  • igo-sample-submission-node Public

    Sample Submission API written in node.js

    mskcc/igo-sample-submission-node’s past year of commit activity
    JavaScript 0 2 1 (1 issue needs help) 31 Updated Mar 6, 2026
  • igo-delivery Public

    Delivery email, symlinks and permissions for IGO projects

    mskcc/igo-delivery’s past year of commit activity
    Python 1 Apache-2.0 0 0 1 Updated Mar 5, 2026
  • tempo Public

    CCS research pipeline to process WES and WGS TN pairs

    mskcc/tempo’s past year of commit activity
    Groovy 7 0 50 (1 issue needs help) 12 Updated Mar 4, 2026
  • beagle_cli Public

    Beagle API Command Line Utility

    mskcc/beagle_cli’s past year of commit activity
    Python 1 1 8 3 Updated Feb 26, 2026
  • vcf2maf Public

    Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

    mskcc/vcf2maf’s past year of commit activity
    Perl 412 222 94 2 Updated Feb 20, 2026
  • neoantigen-pipeline Public

    Pipeline for computing neoantigen qualities from DNA and RNA-Seq data

    mskcc/neoantigen-pipeline’s past year of commit activity
    Python 6 MIT 1 13 1 Updated Feb 20, 2026
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