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@DeepGraphLearning

MilaGraph

Research group led by Prof. Jian Tang at Mila-Quebec AI Institute (https://mila.quebec/) focusing on graph representation learning and graph neural networks.

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  1. torchdrug torchdrug Public

    A powerful and flexible machine learning platform for drug discovery

    Python 1.6k 218

  2. ULTRA ULTRA Public

    A foundation model for knowledge graph reasoning

    Python 602 82

  3. GMNN GMNN Public

    Graph Markov Neural Networks

    Python 413 101

  4. GearNet GearNet Public

    GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)

    Python 317 32

  5. NBFNet NBFNet Public

    Official implementation of Neural Bellman-Ford Networks (NeurIPS 2021)

    Python 229 32

  6. ConfGF ConfGF Public

    Implementation of Learning Gradient Fields for Molecular Conformation Generation (ICML 2021).

    Python 172 38

Repositories

Showing 10 of 53 repositories
  • PerturbDiff Public
    DeepGraphLearning/PerturbDiff’s past year of commit activity
    Python 12 2 1 0 Updated Mar 10, 2026
  • MATH60629A_2025A Public Forked from denafiroozi/Machine-Learning-I
    DeepGraphLearning/MATH60629A_2025A’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Nov 28, 2025
  • Math80648A_2025A Public Forked from AndyJZhao/Math60630A_2024A
    DeepGraphLearning/Math80648A_2025A’s past year of commit activity
    SCSS 0 2 0 0 Updated Nov 28, 2025
  • HAX Public

    Overcoming Long-Context Limitations of State-Space Models via Context-Dependent Sparse Attention (NeurIPS 2025)

    DeepGraphLearning/HAX’s past year of commit activity
    Python 18 0 0 0 Updated Sep 30, 2025
  • GearNet Public

    GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)

    DeepGraphLearning/GearNet’s past year of commit activity
    Python 317 MIT 32 24 1 Updated Jun 13, 2025
  • GearBind Public

    Pretrainable geometric graph neural network for antibody affinity maturation

    DeepGraphLearning/GearBind’s past year of commit activity
    Python 72 Apache-2.0 12 8 0 Updated Mar 18, 2025
  • scCello Public

    [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model

    DeepGraphLearning/scCello’s past year of commit activity
    Python 21 5 1 1 Updated Mar 12, 2025
  • ProteinTutorial_AAAI2025 Public

    https://deepgraphlearning.github.io/ProteinTutorial_AAAI2025/

    DeepGraphLearning/ProteinTutorial_AAAI2025’s past year of commit activity
    CSS 6 MIT 0 0 0 Updated Feb 27, 2025
  • ULTRA Public

    A foundation model for knowledge graph reasoning

    DeepGraphLearning/ULTRA’s past year of commit activity
    Python 602 MIT 82 4 0 Updated Feb 3, 2025
  • GraphAny Public

    GraphAny: Fully-inductive Node Classification on Arbitrary Graphs

    DeepGraphLearning/GraphAny’s past year of commit activity
    Python 154 MIT 17 2 1 Updated Feb 3, 2025
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